PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT08336
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 307aa    MW: 33053.6 Da    PI: 6.712
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT08336genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-081563147
                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                     +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k  ++r  +y
         EMT08336 15 KGPWTEEEDKALVEHIQKRGGNggSWRGLPKAGGLNRCGKASRLRGTNY 63
                     79**************************999999*****9988886666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.1E-15767IPR009057Homeodomain-like
PROSITE profilePS5129414.6091068IPR017930Myb domain
SMARTSM007177.6E-41466IPR001005SANT/Myb domain
PfamPF002494.3E-61564IPR001005SANT/Myb domain
SuperFamilySSF466891.12E-121692IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-56892IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNGGSW RGLPKAGGLN RCGKASRLRG  60
TNYLRPDIKR GNFSDGEERL IITLHAGLGN KYVGDDRDAP EGPDGQRDQE LLEHAHPQEA  120
VAHGRRPRHP PAAATRPDQP RRQRRRRRAP LGGGAASLGG LDTGALMQAQ LLQQLLQAIG  180
SNNSTTGLIA NLASANTVLN SSSSFVPNQM NYLQTGYLSN NSNFAEQHVV QQQLTNDTSP  240
GTSSFAAAEP ADQLCNTAAS YDVAPAGDWS PTQEFGGLLE PMMELPGLCS LEGDSFWKDT  300
SEDSYRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140145RRQRRR
2140147RRQRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-116AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.25e-88PREDICTED: transcription factor MYB39
TrEMBLM8B2X20.0M8B2X2_AEGTA; Transcription factor MYB39
STRINGMLOC_20358.11e-78(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-39myb domain protein 9